Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P02131 Eustifoline D 221.0836 222.0913 182
P24545 5-Methoxy-3,4-methylenedioxyamphetamine 209.1042 210.1126 182
P37572 28-Glucosyloleanolic acid 3-[rhamnosyl-(1->2)-galactosyl-(1->3)-glucuronide] 1116.5415 1117.5463 182
P43306 102.0458 103.0535 182
P05454 Leonuriside A 332.1106 333.1163 181
P06475 (+)-5,17-Dehydromatrine N-oxide 262.1661 263.1722 181
P16872 Methyl-4-O-caffeoylquinate 368.1086 369.1180 181
P21471 Illifunone C 252.1331 253.1413 181
P33036 1,5-Dihydro-7-(1-piperidinyl)-imidazo(2,1-b)quinazolin-2(3H)-one 270.1495 271.1555 181
P52796 Famprofazone 377.2443 378.2528 181

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.02G108500 hypothetical protein AT1G69580:AT1G69580:Homeodomain-like superfamily protein 17
Glyma.02G303800 hypothetical protein AT3G20910:NF-YA9:nuclear factor Y, subunit A9 17
Glyma.04G023600 hypothetical protein AT4G24200:AT4G24200:Transcription elongation factor (TFIIS) family protein 17
Glyma.04G044800 LBD16 LBD domain-containing transcription factor NA 17
Glyma.04G251500 hypothetical protein AT1G44835:AT1G44835:YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein 17
Glyma.05G237500 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 17
Glyma.06G132800 hypothetical protein AT4G27680:AT4G27680:P-loop containing nucleoside triphosphate hydrolases superfamily protein__AT5G53540:AT5G53540:P-loop containing nucleoside triphosphate hydrolases superfamily protein 17
Glyma.06G133000 hypothetical protein NA 17
Glyma.06G133400 hypothetical protein AT5G53570:AT5G53570:Ypt/Rab-GAP domain of gyp1p superfamily protein 17
Glyma.06G133600 hypothetical protein NA 17