Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P41007	Loperamide oxide	492.2170	493.2235	202
P52185	Reproterol	389.1693	390.1778	202
P00207	Perfluorovaleric acid	263.9845	264.9900	201
P24923	Paracentrone	462.3127	463.3205	201
P28922	1-hexadecanoyl-2-(5-oxo-valeroyl)-sn-glycero-3-phospho-(1'-myo-inositol)	670.3308	671.3355	201
P36391		822.1200	823.1290	201
P52233		232.6061	233.6148	201
P10808		221.0416	222.0470	200
P33620	7-Acetyl-11beta-acetoxydihydronomilin	616.2508	617.2564	200
P47899	1-(1-Phenylcyclohexyl)-4-hydroxypiperidine	259.1988	260.2068	200

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.01G181000	hypothetical protein	NA	18
Glyma.01G211800	hypothetical protein	NA	18
Glyma.03G028900	hypothetical protein	AT3G60730:AT3G60730:Plant invertase/pectin methylesterase inhibitor superfamily	18
Glyma.04G083600	hypothetical protein	NA	18
Glyma.04G086300	hypothetical protein	NA	18
Glyma.04G103800	hypothetical protein	NA	18
Glyma.06G135300	hypothetical protein	NA	18
Glyma.06G135400	hypothetical protein	NA	18
Glyma.06G190800	hypothetical protein	NA	18
Glyma.06G283600	hypothetical protein	NA	18