Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P55566	Boceprevir	519.3459	520.3522	—
P55567		114.9560	115.9638	—
P55568		134.9625	135.9704	—
P55569	Cyromazine	166.0977	167.1054	—
P55570		232.8916	233.8992	—
P55573		609.1749	610.1805	—
P55575	Tebufelone	300.2051	601.4175	—
P55578		333.8152	334.8227	—
P55579		259.8976	260.9052	—
P55580		253.9070	254.9140	—

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.03G040600	hypothetical protein	AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3	896
Glyma.16G025400	hypothetical protein	AT2G46430:CNGC3:cyclic nucleotide gated channel 3	892
Glyma.16G025300	hypothetical protein	NA	890
Glyma.18G263900	hypothetical protein	AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein	887
Glyma.09G016800	hypothetical protein	NA	882
Glyma.12G183400	hypothetical protein	NA	879
Glyma.15G256300	hypothetical protein	NA	877
Glyma.06G317100	hypothetical protein	AT5G61520:AT5G61520:Major facilitator superfamily protein	876
Glyma.16G114900	hypothetical protein	NA	874
Glyma.02G204700	hypothetical protein	AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein	863