Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P45656	Aglain B	630.2840	631.2925	117
P45744		366.6513	367.6565	117
P53375	N(6)-Monobutyryladenosine	337.1396	338.1472	117
P53643		662.1493	663.1566	117
P54509	n2-Acetyl,n6-methyllysine	202.1324	203.1390	117
P04587	Methionyl-Glutamate	278.0937	279.1010	116
P13464	Tripterygiumine T	693.2310	694.2329	116
P17580	Swietenidin B	205.0721	206.0796	116
P22655	Candoxatrilat	399.2293	400.2366	116
P25819	Thonzylamine	286.1743	287.1822	116

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.03G040600	hypothetical protein	AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3	896
Glyma.16G025400	hypothetical protein	AT2G46430:CNGC3:cyclic nucleotide gated channel 3	892
Glyma.16G025300	hypothetical protein	NA	890
Glyma.18G263900	hypothetical protein	AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein	887
Glyma.09G016800	hypothetical protein	NA	882
Glyma.12G183400	hypothetical protein	NA	879
Glyma.15G256300	hypothetical protein	NA	877
Glyma.06G317100	hypothetical protein	AT5G61520:AT5G61520:Major facilitator superfamily protein	876
Glyma.16G114900	hypothetical protein	NA	874
Glyma.02G204700	hypothetical protein	AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein	863