Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P11281 1,8-Naphthyridine, 2-fluoro- 148.0458 149.0522 98
P12200 Acadesine 258.0980 259.1064 98
P12206 Sporovexin C 309.1202 310.1247 98
P13122 688.8638 689.8725 98
P17777 Loviride 350.0610 351.0673 98
P20802 Butanedioic acid, octenyl- 228.1364 229.1418 98
P21547 725.1200 726.1306 98
P22343 1-hexadecanoyl-2-(4-hydroxy-6-carboxy-5E-hexenoyl)-sn-glycero-3-phosphoethanolamine 609.3356 610.3434 98
P22413 (7E)-(3S, 6RS)-6,19-epidioxy-24,24-difluoro-9,10-seco-5(10),7-cholestadiene-3,25-diol 468.3009 469.3105 98
P22671 Kodaistatin C 646.2096 647.2162 98

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 4,293
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 4,037
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 3,822
Glyma.12G202300 hypothetical protein NA 3,817
Glyma.05G127500 hypothetical protein NA 3,663
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 3,582
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 3,568
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 3,568
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3,548
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 3,529