Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P55250		624.9316	625.9393	—
P55251		283.2792	284.2855	—
P55252	N1,N5,N10-Tricaffeoyl spermidine	631.2498	632.2512	—
P55253		608.9013	609.9125	—
P55258		608.9253	609.9268	—
P55259		608.6906	609.6976	—
P55260		624.9479	625.9558	—
P55262	6-Ketomyristic acid	242.1902	243.1973	—
P55265	Morellic acid	560.2383	561.2470	—
P55271		541.2613	542.2687	—

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.20G177500	hypothetical protein	AT5G63220:AT5G63220:golgi-to-ER traffic-like protein	21
Glyma.02G074100	hypothetical protein	AT5G13570:DCP2:decapping 2	20
Glyma.02G205500	hypothetical protein	AT5G57870:eIFiso4G1:MIF4G domain-containing protein / MA3 domain-containing protein	20
Glyma.03G056300	hypothetical protein	AT2G38270:CXIP2:CAX-interacting protein 2	20
Glyma.05G162500	hypothetical protein	NA	20
Glyma.05G221800	hypothetical protein	NA	20
Glyma.05G229700	hypothetical protein	NA	20
Glyma.05G239000	hypothetical protein	NA	20
Glyma.07G058300	hypothetical protein	AT1G01450:AT1G01450:Protein kinase superfamily protein	20
Glyma.07G074200	hypothetical protein	NA	20