Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P15260	1-(6-Aminopurin-9-yl)-5-methylpyrimidine-2,4-dione	259.0816	260.0894	120
P15262	Naphazoline hydrochloride	210.1169	211.1241	120
P15837		468.7569	469.7633	120
P16705	Aegelinol	246.0886	247.0960	120
P17012	6-Hydroxyluteolin 7-[6''-(3-hydroxy-3-methylglutaryl)glucoside]-3-glucuronide	784.1667	785.1735	120
P18017	2H-Pyran-2-one	96.0205	97.0279	120
P20979		129.0453	130.0515	120
P22925	3-Hydroxyhexanedioylcarnitine	305.1451	306.1527	120
P25116	2,3,4,2',4',6'-Hexamethoxychalcone	388.1529	389.1591	120
P25172	Validamycin G	513.2035	514.2129	120

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.12G049300	hypothetical protein	NA	946
Glyma.06G261900	hypothetical protein	NA	937
Glyma.07G021700	hypothetical protein	NA	936
Glyma.16G147900	hypothetical protein	NA	926
Glyma.07G017600	hypothetical protein	NA	924
Glyma.16G115500	hypothetical protein	NA	922
Glyma.16G121000	IQD20	AT3G51380:IQD20:IQ-domain 20	920
Glyma.13G201600	hypothetical protein	NA	915
Glyma.16G146700	hypothetical protein	NA	913
Glyma.16G105100	hypothetical protein	NA	904