Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P03825 1,2-(dioctanoyl)-sn-glycero-3-phospho-(1'- myo-inositol-4',5'-bisphosphate) 746.2092 747.2147 273
P11501 Tryptophyl-Alanine 275.1246 276.1320 272
P01578 3-Butene-1,2-diol 88.0524 89.0597 270
P14173 968.2652 969.2753 269
P14850 N-(E-4-coumaroyl)-aspartate 279.0736 280.0824 268
P23722 Echinacoside 786.2716 787.2782 266
P25270 (6E)-8-Oxogeraniol 168.1138 169.1208 266
P11169 Benthiavalicarb isopropyl 381.1532 382.1579 265
P19356 Terazosin 387.1942 388.2003 265
P30039 Tigloylseneganolide A 550.2618 551.2669 263

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.01G039600 hypothetical protein NA 22
Glyma.01G231700 hypothetical protein AT4G10180:DET1:light-mediated development protein 1 / deetiolated1 (DET1) 22
Glyma.02G097300 hypothetical protein AT1G10840:TIF3H1:translation initiation factor 3 subunit H1 22
Glyma.02G097400 hypothetical protein AT3G28040:AT3G28040:Leucine-rich receptor-like protein kinase family protein 22
Glyma.03G177600 hypothetical protein AT2G37050:AT2G37050:Leucine-rich repeat protein kinase family protein 22
Glyma.03G244500 hypothetical protein AT3G05090:LRS1:Transducin/WD40 repeat-like superfamily protein 22
Glyma.04G083000 hypothetical protein AT4G32780:AT4G32780:phosphoinositide binding protein 22
Glyma.04G111300 hypothetical protein AT1G71380:CEL3:cellulase 3 22
Glyma.04G237700 hypothetical protein NA 22
Glyma.06G204900 hypothetical protein AT1G74120:AT1G74120:Mitochondrial transcription termination factor family protein 22