Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P55395 407.3585 408.3657 —
P55396 (2E)-4-Hydroxyhexadecenoylcarnitine 413.3150 414.3221 —
P55398 Guangsangon M 610.1764 611.1829 —
P55399 5-Oxooctyl glucosinolate 445.1089 446.1162 —
P55401 Saligcinnamide 490.3950 491.4025 —
P55402 Myobontioside B 554.1645 555.1716 —
P55405 Cer(d17:1/22:6(4Z,7Z,11E,13Z,15E,19Z)-2OH(10S,17)) 627.4861 628.4955 —
P55407 Dibutylphthalic acid 278.1498 279.1577 —
P55414 Terminamine C 632.4352 633.4429 —
P55417 621.2630 622.2681 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.02G046600 hypothetical protein AT2G17820:HK1:histidine kinase 1 23
Glyma.04G183500 hypothetical protein NA 23
Glyma.04G236900 hypothetical protein AT5G53460:GLT1:NADH-dependent glutamate synthase 1 23
Glyma.07G070900 hypothetical protein AT1G31870:AT1G31870:pre-mRNA-splicing factor of RES complex protein 23
Glyma.08G140400 hypothetical protein NA 23
Glyma.08G184000 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 23
Glyma.09G042600 hypothetical protein AT5G49150:GEX2:gamete expressed 2 23
Glyma.11G147500 hypothetical protein AT5G60550:GRIK2:geminivirus rep interacting kinase 2__AT3G45240:GRIK1:geminivirus rep interacting kinase 1 23
Glyma.12G008000 hypothetical protein AT3G52090:NRPB11:DNA-directed RNA polymerase, RBP11-like protein 23
Glyma.12G023300 hypothetical protein NA 23