Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P23848		475.0555	476.0632	133
P25001	Leukotriene C5	623.2954	624.3016	133
P29543	Aristoloterpenate II	527.1907	528.1979	133
P30895	1-(6Z,9Z,12Z-octadecatrienoyl)-glycero-3-phosphoserine	519.2627	520.2710	133
P30962	Spongothymidine	258.0832	259.0902	133
P37482	Pomalidomide	273.0701	274.0768	133
P39497	alpha-Zearalenol	320.1584	321.1667	133
P42354		1044.2354	1045.2401	133
P42759	Resorcinol	110.0355	111.0433	133
P45429		631.2839	632.2928	133

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.01G123900	hypothetical protein	AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein	996
Glyma.14G075900	hypothetical protein	NA	993
Glyma.16G031600	hypothetical protein	NA	992
Glyma.20G019700	hypothetical protein	NA	968
Glyma.16G057600	hypothetical protein	AT3G27170:CLC-B:chloride channel B	965
Glyma.06G291600	hypothetical protein	AT4G22930:PYR4:pyrimidin 4	951
Glyma.06G292000	hypothetical protein	NA	951
Glyma.06G292100	hypothetical protein	NA	951
Glyma.06G085200	hypothetical protein	NA	949
Glyma.09G053800	hypothetical protein	NA	949