Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P34971	6-Methoxycrinamine	331.1434	332.1512	104
P36897		167.0987	168.1046	104
P38983	Chrysopentamine	559.2948	560.3042	104
P39845	Celogentin C	1026.5333	1027.5424	104
P40759	Mibefradil	495.2894	496.2944	104
P41710	D-Phe-L-Pro-L-Arg-(Chloromethyl) ketone	478.2099	479.2175	104
P41812		1155.5600	1156.5639	104
P41885	Yayoisaponin C	1096.5384	1097.5482	104
P42387	m-Trigallic acid	474.0456	475.0536	104
P42596	PE(TXB2/DiMe(9,3))	843.4899	844.5009	104

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.01G123900	hypothetical protein	AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein	996
Glyma.14G075900	hypothetical protein	NA	993
Glyma.16G031600	hypothetical protein	NA	992
Glyma.20G019700	hypothetical protein	NA	968
Glyma.16G057600	hypothetical protein	AT3G27170:CLC-B:chloride channel B	965
Glyma.06G291600	hypothetical protein	AT4G22930:PYR4:pyrimidin 4	951
Glyma.06G292000	hypothetical protein	NA	951
Glyma.06G292100	hypothetical protein	NA	951
Glyma.06G085200	hypothetical protein	NA	949
Glyma.09G053800	hypothetical protein	NA	949