Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P25388	Rigidiusculamide A	251.1199	252.1281	108
P27155	Hypusine	233.1701	234.1761	108
P27740	Tardioxopiperazine B	393.2420	394.2511	108
P28553	Glycyl-l-histidyl-l-lysine	340.1863	341.1936	108
P29590	Hedyotisol A	810.3054	811.3138	108
P31031	2-Acetylpyridine	121.0523	122.0596	108
P32245	Neoenactin NL2	386.2734	387.2804	108
P32783		774.2906	775.2987	108
P34820	Bacilosarcin A	491.2181	492.2244	108
P40317	10,11-Dihydro-chalcomycin	702.3920	703.3973	108

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.01G123900	hypothetical protein	AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein	996
Glyma.14G075900	hypothetical protein	NA	993
Glyma.16G031600	hypothetical protein	NA	992
Glyma.20G019700	hypothetical protein	NA	968
Glyma.16G057600	hypothetical protein	AT3G27170:CLC-B:chloride channel B	965
Glyma.06G291600	hypothetical protein	AT4G22930:PYR4:pyrimidin 4	951
Glyma.06G292000	hypothetical protein	NA	951
Glyma.06G292100	hypothetical protein	NA	951
Glyma.06G085200	hypothetical protein	NA	949
Glyma.09G053800	hypothetical protein	NA	949