Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P25859	Zalypsis	709.2569	710.2650	110
P27893	Lucyoside J	810.4380	811.4434	110
P28885	Staphylopine	328.1394	329.1467	110
P29567	Lesopitron	320.1499	321.1569	110
P30547	Loratadine	382.1433	765.2943	110
P31925	Jubanine C	665.3694	666.3801	110
P33220	Arundin	440.2015	441.2109	110
P35526	Scammonin V	924.4930	925.5044	110
P39967	Trh-gly	420.1769	421.1838	110
P40736	2,4-Diamino-6-dimethylamino-1,3,5-triazine	154.0977	155.1053	110

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.01G123900	hypothetical protein	AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein	996
Glyma.14G075900	hypothetical protein	NA	993
Glyma.16G031600	hypothetical protein	NA	992
Glyma.20G019700	hypothetical protein	NA	968
Glyma.16G057600	hypothetical protein	AT3G27170:CLC-B:chloride channel B	965
Glyma.06G291600	hypothetical protein	AT4G22930:PYR4:pyrimidin 4	951
Glyma.06G292000	hypothetical protein	NA	951
Glyma.06G292100	hypothetical protein	NA	951
Glyma.06G085200	hypothetical protein	NA	949
Glyma.09G053800	hypothetical protein	NA	949