Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P07144	Diguanosine diphosphate	708.1155	709.1216	121
P07500	Diaveridine	260.1291	261.1357	121
P07947	Valylproline	214.1297	215.1368	121
P08647	5-Deoxy-5-aminoshikimic acid	173.0699	174.0765	121
P13231	Atromentin	324.0635	325.0717	121
P19235	(-)-Oriciacridone A	636.2152	637.2192	121
P27981	Notoamide G	477.2233	478.2307	121
P29119	Validamycin E	659.2616	660.2707	121
P30744	Nifekalant	405.2011	406.2077	121
P33280	(-)-Morphinan	227.1650	228.1726	121

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.01G123900	hypothetical protein	AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein	996
Glyma.14G075900	hypothetical protein	NA	993
Glyma.16G031600	hypothetical protein	NA	992
Glyma.20G019700	hypothetical protein	NA	968
Glyma.16G057600	hypothetical protein	AT3G27170:CLC-B:chloride channel B	965
Glyma.06G291600	hypothetical protein	AT4G22930:PYR4:pyrimidin 4	951
Glyma.06G292000	hypothetical protein	NA	951
Glyma.06G292100	hypothetical protein	NA	951
Glyma.06G085200	hypothetical protein	NA	949
Glyma.09G053800	hypothetical protein	NA	949