Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P24428 Talniflumate 414.0784 415.0855 205
P25466 Niazinin 343.1126 344.1185 205
P15762 Aristoloterpenate II 527.1950 528.2020 204
P03342 D-Alanyl-alanyl-poly(glycerolphosphate) 314.0858 315.0931 203
P05821 Pandangolide 3 362.1408 363.1478 203
P12578 4E,6E-undecenal 166.1341 167.1417 203
P14723 1-(9Z-octadecenoyl)-2-(5-oxo-7-carboxy-6E-heptenoyl)-sn-glycero-3-phosphoserine 691.3337 692.3416 203
P53229 Leurubicin 656.2476 657.2525 203
P13994 2-Methyl-1-hydroxypropyl-ThPP 496.0955 497.1062 202
P39176 Microtoenin C 941.5023 942.5093 202

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.09G052500 hypothetical protein AT3G19760:EIF4A-III:eukaryotic initiation factor 4A-III__AT1G51380:AT1G51380:DEA(D/H)-box RNA helicase family protein 31
Glyma.10G261100 hypothetical protein NA 31
Glyma.11G015300 hypothetical protein AT3G60500:CER7:3'-5'-exoribonuclease family protein 31
Glyma.13G062700 hypothetical protein AT3G01180:SS2:starch synthase 2 31
Glyma.13G062800 hypothetical protein AT5G48600:SMC3:structural maintenance of chromosome 3 31
Glyma.15G024400 hypothetical protein AT1G17620:AT1G17620:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 31
Glyma.15G172900 hypothetical protein AT5G57070:AT5G57070:hydroxyproline-rich glycoprotein family protein 31
Glyma.16G145400 hypothetical protein AT3G12090:TET6:tetraspanin6 31
Glyma.18G027300 hypothetical protein NA 31
Glyma.18G045600 hypothetical protein NA 31