Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P55548 347.3085 348.3149 —
P55550 16-Methylheptadecanoylcarnitine 427.3718 428.3783 —
P55555 Pro-Pro-Phe 359.1790 360.1862 —
P55556 273.9162 274.9238 —
P55557 177.9525 178.9596 —
P55558 127.9526 128.9604 —
P55560 Evodone 164.0824 329.1720 —
P55562 Isomytiloxanthin 598.4011 599.4090 —
P55563 108.0105 109.0176 —
P55565 (-)-Tetrodecamycin 334.1416 335.1503 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G149900 hypothetical protein NA 32
Glyma.20G222800 hypothetical protein AT3G04760:AT3G04760:Pentatricopeptide repeat (PPR-like) superfamily protein 32
Glyma.01G039400 hypothetical protein AT1G10417:AT1G10417:RUN/FYVE domain protein 31
Glyma.03G006000 hypothetical protein AT1G08680:ZIGA4:ARF GAP-like zinc finger-containing protein ZIGA4 31
Glyma.03G017500 hypothetical protein NA 31
Glyma.05G123300 hypothetical protein NA 31
Glyma.06G073700 hypothetical protein AT2G25660:emb2410:embryo defective 2410 31
Glyma.06G074700 hypothetical protein AT2G25730:AT2G25730:zinc finger FYVE domain protein 31
Glyma.08G124200 hypothetical protein AT1G30500:NF-YA7:nuclear factor Y, subunit A7 31
Glyma.09G019400 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 31