Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P05765	Lycomarasmine B	277.0881	278.0973	165
P12117	Nutlin-3	580.1626	581.1677	165
P18034		276.1936	277.2003	165
P21529	Hosloppin	392.0948	393.1016	165
P22253		360.2841	361.2899	165
P22299	Pubescenine	495.2821	496.2855	165
P29912	O-Phosphoviomycin	765.2905	766.2988	165
P42723	CJ 15208	577.2763	578.2781	165
P45180		199.1326	200.1399	165
P45663	Kopsaporine	426.1785	427.1816	165

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.08G132700		hypothetical protein	NA	32
Glyma.09G231100		hypothetical protein	AT5G42970:COP8:Proteasome component (PCI) domain protein	32
Glyma.10G192000	NF-YB1a		NA	32
Glyma.12G096000		hypothetical protein	AT1G08465:YAB2:Plant-specific transcription factor YABBY family protein	32
Glyma.13G149800		hypothetical protein	AT2G36580:AT2G36580:Pyruvate kinase family protein	32
Glyma.13G202000		hypothetical protein	NA	32
Glyma.17G008200		hypothetical protein	NA	32
Glyma.17G154300		hypothetical protein	AT5G46610:AT5G46610:aluminum activated malate transporter family protein	32
Glyma.18G079100		hypothetical protein	NA	32
Glyma.18G206000		hypothetical protein	NA	32