Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P11739 THF-L-glutamate 574.2136 575.2230 144
P11990 Methyl 18-bromo-5,6-trans-endomethylene-7,11,15-trimethyl-8E,10Z-octadecadien-17-ynoate 422.1803 423.1876 144
P15141 N-(2-Methylbutyl)-2E-undecene-8,10-diynamide 245.1779 246.1853 144
P15383 (7R)-7-(5-Carboxy-5-oxopentanoyl)aminocephalosporinate 414.0740 415.0813 144
P23163 Urdamycinone F 504.1630 505.1692 144
P23229 Isariotin E 377.2268 378.2342 144
P24964 1066.3562 1067.3588 144
P27877 Pinocembrin 7-O-neohesperidoside 3'''-O-acetate 606.1949 607.2039 144
P33592 521.2494 522.2539 144
P34785 4'-(beta-D-Glucopyranosyloxy)-7',8'-dihydro-4,4'-diapo-psi,psi-caroten-4-oic acid 608.3368 609.3435 144

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G106900 hypothetical protein NA 1,140
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1,138
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1,126
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1,126
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1,116
Glyma.09G016500 hypothetical protein NA 1,110
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1,105
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1,087
Glyma.06G291800 hypothetical protein NA 1,075
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1,074