Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P13883 Kaempferol 3-O-caffeoyl-sophoroside 7-O-glucoside 934.2391 935.2481 158
P29430 Benzaldehyde 106.0416 107.0484 158
P41373 3-Benzoyloxy-6-oxo-12-ursen-28-oic acid 574.3653 575.3707 158
P45179 Spicataxine 669.3432 670.3494 158
P50043 2,5-Dimethylfuran 96.0579 97.0652 158
P05656 6,7-Dimethoxy-2-(piperazin-1-yl)quinazolin-4-amine 289.1577 290.1655 157
P22528 Adiposin 2 661.2467 662.2558 157
P29660 Artemether 298.1742 299.1810 157
P34088 2'-O-(alpha-D-Manp)-6'-O-(alpha-D-Manp-1->6-alpha-D-Manp)-(1-heptadecanoyl-sn-glycero-3-phospho-1'-myo-inositol) 1072.4778 1073.4820 157
P36081 173.1252 174.1316 157

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.07G010700 hypothetical protein AT3G13730:CYP90D1:cytochrome P450, family 90, subfamily D, polypeptide 1 36
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 36
Glyma.09G056100 hypothetical protein AT2G18915:LKP2:LOV KELCH protein 2 36
Glyma.09G212100 hypothetical protein AT4G19040:EDR2:ENHANCED DISEASE RESISTANCE 2 36
Glyma.12G197500 hypothetical protein NA 36
Glyma.12G197800 hypothetical protein NA 36
Glyma.14G170900 hypothetical protein AT1G78060:AT1G78060:Glycosyl hydrolase family protein 36
Glyma.15G020300 hypothetical protein AT1G51950:IAA18:indole-3-acetic acid inducible 18__AT3G16500:PAP1:phytochrome-associated protein 1 36
Glyma.15G262400 hypothetical protein AT1G16310:AT1G16310:Cation efflux family protein__AT1G79520:AT1G79520:Cation efflux family protein 36
Glyma.16G139400 hypothetical protein AT3G50870:MNP:GATA type zinc finger transcription factor family protein 36