Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P02131 Eustifoline D 221.0836 222.0913 182
P24545 5-Methoxy-3,4-methylenedioxyamphetamine 209.1042 210.1126 182
P37572 28-Glucosyloleanolic acid 3-[rhamnosyl-(1->2)-galactosyl-(1->3)-glucuronide] 1116.5415 1117.5463 182
P43306 102.0458 103.0535 182
P05454 Leonuriside A 332.1106 333.1163 181
P06475 (+)-5,17-Dehydromatrine N-oxide 262.1661 263.1722 181
P16872 Methyl-4-O-caffeoylquinate 368.1086 369.1180 181
P21471 Illifunone C 252.1331 253.1413 181
P33036 1,5-Dihydro-7-(1-piperidinyl)-imidazo(2,1-b)quinazolin-2(3H)-one 270.1495 271.1555 181
P52796 Famprofazone 377.2443 378.2528 181

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.13G095000 hypothetical protein NA 1,218
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1,192
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1,190
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1,175
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 1,171
Glyma.19G011600 hypothetical protein NA 1,164
Glyma.16G111100 hypothetical protein NA 1,160
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1,158
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1,144
Glyma.01G120000 hypothetical protein NA 1,142