Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P11263 Psilostachyin C 264.1332 265.1404 224
P14345 Levetiracetam 170.1025 171.1105 224
P17555 Latrunculin C 397.1929 398.2009 224
P42432 Phthalsaurediethylhexylester 306.1820 613.3715 224
P40215 CDP-DG(i-18:0/18:2(9Z,11Z)) 1005.5413 1006.5526 223
P07094 5-(Methoxymethyl)-1H-pyrrole-2-carbaldehyde 139.0620 140.0688 222
P38156 Montanastatin 740.4093 741.4144 222
P41025 CDP-DG(i-15:0/20:4(5Z,8Z,11Z,13E)+=O(15)) 1001.4851 1002.4923 222
P06065 4-Toluenesulfonamide 171.0341 172.0404 221
P13789 (2S,3S)-3-Hydroxyasparagine 148.0485 149.0561 221

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.10G193600 hypothetical protein AT5G07475:AT5G07475:Cupredoxin superfamily protein 45
Glyma.10G194300 hypothetical protein AT5G61580:PFK4:phosphofructokinase 4 45
Glyma.12G185900 hypothetical protein AT3G15040:AT3G15040:senescence regulator (Protein of unknown function, DUF584) 45
Glyma.15G108400 hypothetical protein AT1G11840:GLX1:glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 45
Glyma.15G108500 hypothetical protein NA 45
Glyma.16G042600 hypothetical protein AT5G18230:AT5G18230:transcription regulator NOT2/NOT3/NOT5 family protein 45
Glyma.18G105800 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein 45
Glyma.18G214000 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 45
Glyma.03G027900 hypothetical protein AT2G45270:GCP1:glycoprotease 1 44
Glyma.03G085900 hypothetical protein AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) 44