Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P55217 Cryptophycin 52 668.2910 669.3012 —
P55219 Anadur 506.3390 507.3476 —
P55221 609.0220 610.0260 —
P55224 Hicksoane C 608.0116 609.0195 —
P55225 Haloxyline B 435.3725 436.3803 —
P55226 690.1733 691.1811 —
P55227 Pectenol A 582.4057 583.4119 —
P55228 609.6882 610.6931 —
P55232 609.7950 610.7988 —
P55233 667.3010 668.3098 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.03G081100 hypothetical protein NA 45
Glyma.04G084600 hypothetical protein NA 45
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 45
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 45
Glyma.06G307900 hypothetical protein NA 45
Glyma.07G136500 hypothetical protein AT3G53830:AT3G53830:Regulator of chromosome condensation (RCC1) family protein 45
Glyma.09G051100 hypothetical protein NA 45
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 45
Glyma.10G192800 hypothetical protein AT1G04650:AT1G04650:holliday junction resolvase 45
Glyma.10G193500 SODB2 iron-superoxide dismutase AT4G25100:FSD1:Fe superoxide dismutase 1 45