Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P55600	4-O-Demethylpenclomedine	308.8697	309.8759	—
P55602	24-homo-3alpha,7alpha,16alpha-trihydroxy-5beta-cholan-25-oic acid	422.3005	423.3085	—
P55603	Faleoconitine	689.3183	690.3285	—
P55604		128.9612	129.9688	—
P55605		113.9706	114.9777	—
P55606		134.9623	135.9696	—
P55607	Citranaxanthin	456.3418	457.3495	—

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.05G217100	hypothetical protein	AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein	48
Glyma.09G200300	hypothetical protein	NA	48
Glyma.09G209200	hypothetical protein	AT1G32160:AT1G32160:beta-casein (DUF760)	48
Glyma.11G117500	hypothetical protein	NA	48
Glyma.16G117000	hypothetical protein	NA	48
Glyma.16G144600	hypothetical protein	NA	48
Glyma.01G231900	hypothetical protein	AT1G71500:AT1G71500:Rieske (2Fe-2S) domain-containing protein	47
Glyma.02G304500	hypothetical protein	AT5G48300:ADG1:ADP glucose pyrophosphorylase 1	47
Glyma.03G246500	hypothetical protein	AT5G49570:PNG1:peptide-N-glycanase 1	47
Glyma.06G285000	hypothetical protein	AT2G42390:AT2G42390:kinase C substrate, heavy chain-like protein	47