Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P52734	Bialaphos	323.1245	324.1307	101
P01015	Oxaburimamide	214.0929	215.1009	100
P01041		482.0337	483.0418	100
P02048	L-Glutamyl 5-phosphate	227.0189	228.0268	100
P04048	4-Nitroquinoline N-oxide	190.0393	191.0467	100
P04164	Elinafide	520.2115	521.2193	100
P08546		169.0440	170.0507	100
P09036	Delmadinone	360.1485	361.1545	100
P09294	2-Methoxybenzoic acid	152.0462	153.0536	100
P10487	Quercetin 3-(6'''-sinapylglucosyl)(1->2)-galactoside	832.2090	833.2224	100

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.02G205300		hypothetical protein	NA	1,313
Glyma.19G029600		hypothetical protein	NA	1,303
Glyma.18G266100		hypothetical protein	NA	1,302
Glyma.06G305700		hypothetical protein	AT2G05710:ACO3:aconitase 3	1,299
Glyma.06G305600		hypothetical protein	NA	1,290
Glyma.13G156000		hypothetical protein	AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8	1,284
Glyma.03G001500	B15-3-5		AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase	1,280
Glyma.19G218100		hypothetical protein	AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2	1,239
Glyma.02G133800		hypothetical protein	AT1G49660:CXE5:carboxyesterase 5	1,223
Glyma.14G066800		hypothetical protein	NA	1,223