Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P23909 587.2916 588.2975 104
P24951 Homoarbutin 286.1030 287.1097 104
P25295 Okaramine A 520.2457 521.2517 104
P26205 N-Hydroxy-MeIQx 229.0943 230.1007 104
P26478 Asp-Tyr-Met-Gly-Trp-Met-Asp-Phe-NH2 1062.4017 1063.4055 104
P30265 Petromurin A 512.2328 513.2431 104
P30308 pyroglutamyl-histidyl-glycine 323.1237 324.1303 104
P32256 N-(7Z-tetradecenoyl)-homoserine lactone 309.2253 310.2342 104
P33709 UDP-L-threo-4-pentosulose 374.0967 375.1016 104
P34424 (-)-Brainic acid 514.1121 515.1181 104

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.02G205300 hypothetical protein NA 1,313
Glyma.19G029600 hypothetical protein NA 1,303
Glyma.18G266100 hypothetical protein NA 1,302
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 1,299
Glyma.06G305600 hypothetical protein NA 1,290
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1,284
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1,280
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1,239
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1,223
Glyma.14G066800 hypothetical protein NA 1,223