Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P11739 THF-L-glutamate 574.2136 575.2230 144
P11990 Methyl 18-bromo-5,6-trans-endomethylene-7,11,15-trimethyl-8E,10Z-octadecadien-17-ynoate 422.1803 423.1876 144
P15141 N-(2-Methylbutyl)-2E-undecene-8,10-diynamide 245.1779 246.1853 144
P15383 (7R)-7-(5-Carboxy-5-oxopentanoyl)aminocephalosporinate 414.0740 415.0813 144
P23163 Urdamycinone F 504.1630 505.1692 144
P23229 Isariotin E 377.2268 378.2342 144
P24964 1066.3562 1067.3588 144
P27877 Pinocembrin 7-O-neohesperidoside 3'''-O-acetate 606.1949 607.2039 144
P33592 521.2494 522.2539 144
P34785 4'-(beta-D-Glucopyranosyloxy)-7',8'-dihydro-4,4'-diapo-psi,psi-caroten-4-oic acid 608.3368 609.3435 144

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.19G128200 hypothetical protein NA 1,463
Glyma.14G068500 hypothetical protein NA 1,452
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1,439
Glyma.16G139000 hypothetical protein NA 1,430
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1,414
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1,414
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class transcription factor (DUF630 and DUF632) 1,364
Glyma.06G305300 hypothetical protein NA 1,332
Glyma.13G203900 hypothetical protein NA 1,329
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1,324