Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P55235 607.8970 608.9062 —
P55236 Norhygrine 127.0985 128.1063 —
P55237 Briaexcavatolide K 584.2479 585.2553 —
P55238 607.9278 608.9337 —
P55239 609.5829 610.5918 —
P55243 607.9804 608.9906 —
P55244 Beilschmieflavonoid A 614.2514 615.2599 —
P55246 Dicerandrol A 666.1878 667.1909 —
P55247 609.5259 610.5340 —
P55248 Ilmofosine 525.3701 526.3741 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 57
Glyma.17G199600 hypothetical protein AT2G45330:emb1067:RNA 2'-phosphotransferase, Tpt1 / KptA family 57
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 57
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 57
Glyma.20G022000 hypothetical protein NA 57
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 57
Glyma.20G218100 hypothetical protein AT1G32900:GBSS1:UDP-Glycosyltransferase superfamily protein 57
Glyma.04G098100 hypothetical protein AT2G34990:AT2G34990:RING/U-box superfamily protein__AT1G72200:AT1G72200:RING/U-box superfamily protein 56
Glyma.04G235400 hypothetical protein AT3G49260:iqd21:IQ-domain 21 56
Glyma.10G028600 hypothetical protein NA 56