Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P22470	Lithospermoside	329.1094	330.1174	178
P23442	S-(N-Hydroxy-N-methylcarbamoyl)glutathione	380.0975	381.1026	178
P23530	S-Isopropyl 3-methylbut-2-enethioate	158.0767	159.0843	178
P32974		499.7155	500.7233	178
P33573	Torokonine	449.2234	450.2276	178
P37745	Altromycin I	693.2714	694.2799	178
P48147	2-Isopropylfuran	110.0728	111.0801	178
P13948	O-Desmethyl Gefitinib	432.1359	433.1430	177
P18650	U 77803	806.2183	807.2228	177
P26580		475.6741	476.6782	177

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.13G180300	hypothetical protein	NA	62
Glyma.15G218700	hypothetical protein	AT5G63010:AT5G63010:Transducin/WD40 repeat-like superfamily protein	62
Glyma.15G219100	hypothetical protein	AT1G79310:MC7:metacaspase 7__AT1G79330:MC5:metacaspase 5	62
Glyma.15G221400	hypothetical protein	NA	62
Glyma.16G018000	hypothetical protein	NA	62
Glyma.18G044800	hypothetical protein	NA	62
Glyma.19G032500	hypothetical protein	NA	62
Glyma.02G127600	hypothetical protein	NA	61
Glyma.03G039900	hypothetical protein	NA	61
Glyma.05G166400	hypothetical protein	NA	61