Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P24109	3beta-Sulfooxy-7beta-N-acetylglucosaminylchol-5-en-24-oyltaurine	782.2913	783.3012	124
P24278	Aknadicine	345.1608	346.1691	124
P25509	Petunoside	786.2037	787.2111	124
P28666	11-Hydroxyaclacinomycin X	840.3304	841.3421	124
P29891	Ustilipid C	634.3999	635.4102	124
P30850		387.7083	388.7173	124
P32406	Amritoside B	588.2412	589.2511	124
P33884	Stephalonine G	541.2389	542.2484	124
P36856		920.2028	921.2079	124
P37516	Hoffmanniolide	878.4295	879.4342	124

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.15G217400		hypothetical protein	AT3G12680:HUA1:floral homeotic protein (HUA1)	67
Glyma.19G005800		Polyribonucleotide nucleotidyltransferase 2, mitochondrial	AT5G14580:AT5G14580:polyribonucleotide nucleotidyltransferase	67
Glyma.08G109400	CHS1		AT5G13930:TT4:Chalcone and stilbene synthase family protein	66
Glyma.01G170700		hypothetical protein	NA	65
Glyma.02G121500		hypothetical protein	NA	65
Glyma.03G021000		hypothetical protein	NA	65
Glyma.03G073700		hypothetical protein	NA	65
Glyma.03G202700		hypothetical protein	AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein	65
Glyma.07G034300		hypothetical protein	NA	65
Glyma.07G073100		hypothetical protein	NA	65