Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P37253 913.9687 914.9746 146
P44756 Methyl (2E)-2-(10,13-dimethyl-11-oxo-3-pyrrolidin-1-yl-2,7,8,9,12,14,15,16-octahydro-1H-cyclopenta[a]phenanthren-17-ylidene)acetate 409.2568 410.2631 146
P07505 Benzamide, 5-((1,5-bis(4-methoxyphenyl)-1H-pyrazol-3-yl)dimethoxymethyl)-2-chloro- 507.1535 508.1626 145
P07895 Sporovexin C 309.1220 310.1320 145
P10934 Asperuloide C 602.2568 603.2623 145
P14156 Validamycin G 513.2050 514.2127 145
P16247 Petasiphyll A 650.2751 651.2810 145
P21485 Newbouldioside C 976.3055 977.3181 145
P32522 Almitrine 477.2433 478.2469 145
P35761 3,13-Di-O-beta-D-glucopyranosilgeranyllinalol 630.3675 631.3783 145

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 70
Glyma.04G096300 hypothetical protein NA 70
Glyma.04G124600 hypothetical protein NA 70
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 70
Glyma.14G071900 hypothetical protein AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphatidylinositol transfer family protein 70
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 70
Glyma.14G210000 hypothetical protein AT1G65910:NAC028:NAC domain containing protein 28 70
Glyma.14G210400 hypothetical protein AT3G03210:AT3G03210:Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein 70
Glyma.14G210500 hypothetical protein AT3G03220:EXPA13:expansin A13 70
Glyma.15G216800 hypothetical protein NA 70