Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P21750 Vismiaguianone E 428.1608 429.1691 106
P24821 ethyl 11Z-hexadecenoate 282.2559 283.2629 106
P28118 1022.3240 1023.3369 106
P28609 Methylsulfonyl 4-[(2-carbamimidoyl-3,4-dihydro-1H-isoquinolin-7-yl)oxymethyl]-1-pyridin-4-ylpiperidine-4-carboxylate 487.1867 488.1962 106
P29662 2,3-Dihydro-9-hydroxy-2-[1-(6-feruloyl)-beta-D-glucosyloxy-1-methylethyl]-7H-furo[3,2-g][1]benzopyran-7-one 600.1811 601.1892 106
P31521 Conodiparine F 736.3832 737.3898 106
P31941 9-chloro-10-hydroxy-octadecanoic acid 334.2284 335.2363 106
P32356 PA(a-15:0/5-iso PGF2VI) 704.4251 705.4351 106
P32718 A 75943 281.1621 282.1689 106
P35068 508.3543 509.3632 106

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.17G215500 KNAT5 NA 1,609
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1,604
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G61560:MLO6:Seven transmembrane MLO family protein 1,593
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1,576
Glyma.09G058900 hypothetical protein NA 1,562
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1,558
Glyma.03G209700 hypothetical protein NA 1,555
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1,548
Glyma.11G050600 hypothetical protein NA 1,548
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1,543