Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P12304	Amrubicin	483.1476	484.1512	176
P17789	Kaempferol 3-neohesperidoside-7-(6''-malonylglucoside)	872.2263	873.2325	176
P20561		669.1601	670.1662	176
P29540	Kadsuphilol L	606.2044	607.2073	176
P29563	Sulfocostunolide A	312.1036	313.1116	176
P29935	Acantrifoside A	942.5143	943.5248	176
P36283	Isopropyl dodecylfluorophosphonate	294.2113	295.2185	176
P38088		365.6483	366.6561	176
P00499	1-Pentanesulfonic acid	152.0504	153.0569	175
P32791	Tenuecyclamide A	460.0996	461.1056	175

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.16G042100		hypothetical protein	NA	78
Glyma.16G042200		hypothetical protein	AT2G23840:AT2G23840:HNH endonuclease	78
Glyma.18G262800		hypothetical protein	NA	78
Glyma.01G018000		hypothetical protein	NA	77
Glyma.04G096900		hypothetical protein	NA	77
Glyma.05G165300		hypothetical protein	AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296)	77
Glyma.05G166000		hypothetical protein	NA	77
Glyma.05G233500		hypothetical protein	NA	77
Glyma.07G096900	GmChl 2		AT1G19670:CLH1:chlorophyllase 1	77
Glyma.11G154900	PRP3		NA	77