Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P31215		966.3363	967.3449	180
P37602	(6R)-9,10-Dihydroxy-4,7-megastigmadien-3-one-9-O-beta-D-glucopyranoside	386.1922	387.2002	180
P41095		423.3575	424.3622	180
P49211	Bamifylline	385.2106	386.2173	180
P06876	Lembyne A	342.0021	343.0076	179
P14986	N-(2-hydroxyhexadecanoyl)-sphinganine	555.5217	556.5296	179
P21946		999.3356	1000.3371	179
P23960	Upunaphenol N	934.2723	935.2842	179
P29027	Bazzanin J	492.0855	493.0949	179
P35945		475.1093	476.1172	179

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.16G042100		hypothetical protein	NA	78
Glyma.16G042200		hypothetical protein	AT2G23840:AT2G23840:HNH endonuclease	78
Glyma.18G262800		hypothetical protein	NA	78
Glyma.01G018000		hypothetical protein	NA	77
Glyma.04G096900		hypothetical protein	NA	77
Glyma.05G165300		hypothetical protein	AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296)	77
Glyma.05G166000		hypothetical protein	NA	77
Glyma.05G233500		hypothetical protein	NA	77
Glyma.07G096900	GmChl 2		AT1G19670:CLH1:chlorophyllase 1	77
Glyma.11G154900	PRP3		NA	77