Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P14703	Dillapional	236.0658	237.0736	195
P30058	Koraiol	222.1951	223.2018	195
P12116	o-Methylacetophenone	134.0716	135.0790	194
P16820	Petunidin 3-(6''-malonylglucoside)	564.1095	565.1176	194
P28303	Nannochelin B	754.3070	755.3117	194
P37556		807.4435	808.4480	194
P41491		677.8221	678.8305	194
P01926	Hyacinthacine A4	187.1208	188.1264	193
P06218	Repaglinide	452.2673	453.2779	193
P08723	(2R,3R,5R)-2-(S-Pantetheinyl)-carbapenam-3-carboxylate	431.1720	432.1820	193

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.16G042100		hypothetical protein	NA	78
Glyma.16G042200		hypothetical protein	AT2G23840:AT2G23840:HNH endonuclease	78
Glyma.18G262800		hypothetical protein	NA	78
Glyma.01G018000		hypothetical protein	NA	77
Glyma.04G096900		hypothetical protein	NA	77
Glyma.05G165300		hypothetical protein	AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296)	77
Glyma.05G166000		hypothetical protein	NA	77
Glyma.05G233500		hypothetical protein	NA	77
Glyma.07G096900	GmChl 2		AT1G19670:CLH1:chlorophyllase 1	77
Glyma.11G154900	PRP3		NA	77