Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P10912	Luzonoside A	624.2429	625.2544	131
P12415	Euojaponine C	887.2920	888.2965	131
P13473	Cussoracoside C	642.3166	643.3206	131
P15304	Threoninyl-Aspartate	234.0862	235.0941	131
P15354		868.2289	869.2321	131
P15647	Pyrithiamine	258.1525	259.1604	131
P19152	Lophocerine	249.1687	250.1776	131
P25817	Globuloside A	890.2955	891.2990	131
P26151		621.1448	622.1477	131
P27886	Pyripyropene E	451.2329	452.2392	131

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.04G110600	hypothetical protein	NA	79
Glyma.04G110700	hypothetical protein	AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein	79
Glyma.09G110000	hypothetical protein	NA	79
Glyma.14G084200	hypothetical protein	NA	79
Glyma.01G016500	hypothetical protein	AT4G25960:ABCB2:P-glycoprotein 2	78
Glyma.03G250400	hypothetical protein	AT3G04470:AT3G04470:Ankyrin repeat family protein	78
Glyma.08G110200	hypothetical protein	NA	78
Glyma.15G216500	hypothetical protein	NA	78
Glyma.15G220600	hypothetical protein	NA	78
Glyma.15G220800	hypothetical protein	NA	78